Variant report

Variant	rs2851784
Chromosome Location	chr4:160462720-160462721
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13114272	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13117819	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13145068	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1882618	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1922647	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1922648	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1922649	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2244167	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2707704	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28478134	0.82[EUR][1000 genomes]
rs2851775	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2851776	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2851783	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2851785	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2851790	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2851793	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34775142	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4602451	0.87[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3344085	chr4:160462651-160463043	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160459000-160468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160459400-160465200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr4:160459600-160463600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:160460200-160463400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:160460200-160463600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr4:160460200-160468800	Weak transcription	HSMM	muscle
7	chr4:160460400-160463000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr4:160460400-160463600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:160460600-160463400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:160460600-160463800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr4:160461800-160462800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr4:160461800-160463000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:160462000-160463200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:160462000-160463400	Weak transcription	Pancreas	Pancrea
15	chr4:160462400-160463000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:160462600-160463200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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