Variant report

Variant	rs28478134
Chromosome Location	chr4:160438275-160438276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13114272	0.82[EUR][1000 genomes]
rs13117819	0.82[EUR][1000 genomes]
rs1882618	1.00[EUR][1000 genomes]
rs1922647	1.00[EUR][1000 genomes]
rs1922648	0.82[EUR][1000 genomes]
rs2244167	1.00[EUR][1000 genomes]
rs2348410	0.89[AFR][1000 genomes]
rs2707704	1.00[EUR][1000 genomes]
rs2707705	0.86[EUR][1000 genomes]
rs2851775	1.00[EUR][1000 genomes]
rs2851776	1.00[EUR][1000 genomes]
rs2851783	0.82[EUR][1000 genomes]
rs2851784	0.82[EUR][1000 genomes]
rs2851785	1.00[EUR][1000 genomes]
rs2851786	0.90[AFR][1000 genomes]
rs2851790	0.82[EUR][1000 genomes]
rs2851793	0.82[EUR][1000 genomes]
rs72701289	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160433200-160458000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160437000-160438400	Enhancers	HUVEC	blood vessel
3	chr4:160437000-160439000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:160437200-160438400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:160437200-160438400	Enhancers	NH-A	brain
6	chr4:160437400-160438400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:160437400-160438400	Enhancers	Hela-S3	cervix
8	chr4:160437400-160438400	Enhancers	Osteobl	bone
9	chr4:160437400-160438800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:160438200-160438800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr4:160438200-160440800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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