Variant report

Variant	rs1922779
Chromosome Location	chr2:58876778-58876779
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:58871707..58873924-chr2:58875799..58878057,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1014291	0.85[AFR][1000 genomes]
rs1014585	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10196784	0.92[ASN][1000 genomes]
rs1030035	0.83[AFR][1000 genomes]
rs10865307	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1158041	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1159609	0.89[AFR][1000 genomes]
rs11682437	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11693731	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12463832	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13025286	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1861412	0.85[AFR][1000 genomes]
rs1861413	0.81[AFR][1000 genomes]
rs1922778	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2019102	0.93[ASN][1000 genomes]
rs4672254	0.85[AFR][1000 genomes]
rs6745423	0.94[ASN][1000 genomes]
rs6759145	0.82[AFR][1000 genomes]
rs741310	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7572888	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7582485	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7591633	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7598875	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012213	chr2:58671881-58893730	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv535736	chr2:58671881-58893730	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58866400-58879000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:58872400-58877800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:58872600-58877600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr2:58872600-58879400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:58873600-58879600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr2:58873800-58876800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:58875800-58876800	Weak transcription	Fetal Brain Female	brain
8	chr2:58876400-58877400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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