Variant report

Variant	rs1014585
Chromosome Location	chr2:58944795-58944796
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10865307	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1158041	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11682437	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11693731	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12463832	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13025286	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1861410	0.82[ASN][1000 genomes]
rs1922778	0.84[EUR][1000 genomes]
rs1922779	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1922782	0.82[AFR][1000 genomes]
rs35881094	0.90[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4541244	0.85[AFR][1000 genomes]
rs4672257	0.81[ASN][1000 genomes]
rs741310	0.80[EUR][1000 genomes]
rs7572888	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7582485	0.81[EUR][1000 genomes]
rs7591382	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7591633	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58941200-58954600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:58943400-58948400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr2:58943800-58950200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:58944400-58945000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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