Variant report

Variant	rs1861410
Chromosome Location	chr2:58933591-58933592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1014585	0.82[ASN][1000 genomes]
rs10865307	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12463832	0.91[ASN][1000 genomes]
rs1922782	0.96[ASN][1000 genomes]
rs35881094	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4541244	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4671328	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4672257	0.97[ASN][1000 genomes]
rs7586515	0.81[AFR][1000 genomes]
rs7591382	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1861410	USP34	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58929400-58935600	Weak transcription	K562	blood
2	chr2:58931400-58934800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:58932600-58935600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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