Variant report

Variant	rs35881094
Chromosome Location	chr2:58922921-58922922
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:58885228..58886871-chr2:58922217..58924253,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VRK2-5	chr2:58922769-58923190	ENSG00000233723
2	lnc-VRK2-5	chr2:58922769-58923190	ENSG00000233723.3

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1014291	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1014585	0.90[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1030035	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10865307	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11125759	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1159609	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12463832	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12468708	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12477030	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1861410	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1861412	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1861413	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1922782	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2708149	0.87[EUR][1000 genomes]
rs4541244	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4672254	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4672257	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58857776	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6724384	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6759145	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7559954	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7561534	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7582945	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7586515	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7590946	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7591382	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431180	chr2:58857542-59178687	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Tourette's syndrome or obsessive-compulsive disorder	25158072	GWAS catalog

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:58916800-58929200	Weak transcription	K562	blood
2	chr2:58922800-58923000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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