Variant report

Variant	rs1923698
Chromosome Location	chr10:98153797-98153798
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10786288	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs1923692	1.00[JPT][hapmap]
rs1923697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3789948	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7077161	1.00[JPT][hapmap]
rs7079954	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs9633677	0.85[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98145400-98156600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:98149000-98153800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr10:98150000-98156000	Weak transcription	Right Ventricle	heart
4	chr10:98150600-98155600	Weak transcription	Brain Angular Gyrus	brain
5	chr10:98150800-98155600	Weak transcription	Fetal Heart	heart
6	chr10:98151000-98155600	Weak transcription	Brain Anterior Caudate	brain
7	chr10:98151000-98155600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr10:98151000-98155600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:98151200-98156000	Weak transcription	Left Ventricle	heart
10	chr10:98151200-98156000	Weak transcription	Pancreas	Pancrea
11	chr10:98151800-98155600	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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