Variant report

Variant	rs9633677
Chromosome Location	chr10:98160709-98160710
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10786288	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1923698	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs7079954	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98155600-98161200	Enhancers	Fetal Heart	heart
2	chr10:98156800-98160800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:98157000-98160800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:98157000-98162200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:98157200-98161000	Weak transcription	Right Atrium	heart
6	chr10:98157200-98162200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:98159000-98162400	Bivalent Enhancer	Fetal Muscle Leg	muscle
8	chr10:98159200-98161800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:98159200-98161800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:98159400-98160800	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr10:98159400-98161200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:98159400-98161400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:98159400-98161800	Enhancers	Brain Angular Gyrus	brain
14	chr10:98159800-98160800	Weak transcription	Right Ventricle	heart
15	chr10:98159800-98161000	Enhancers	Brain Anterior Caudate	brain
16	chr10:98159800-98172800	Weak transcription	Left Ventricle	heart
17	chr10:98160200-98161200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
18	chr10:98160200-98161400	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr10:98160200-98161600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:98160400-98161000	Enhancers	Psoas Muscle	Psoas
21	chr10:98160400-98161200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr10:98160400-98161200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr10:98160400-98161600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:98160400-98161800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr10:98160400-98161800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:98160600-98160800	Flanking Active TSS	Brain Cingulate Gyrus	brain
27	chr10:98160600-98161000	Active TSS	Brain Hippocampus Middle	brain
28	chr10:98160600-98161200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr10:98160600-98161200	Flanking Active TSS	Brain Substantia Nigra	brain

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