Variant report

Variant	rs7079954
Chromosome Location	chr10:98161744-98161745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10786288	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1923698	0.86[YRI][hapmap];0.81[AFR][1000 genomes]
rs9633677	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1047657	chr10:98123234-98183487	Weak transcription Active TSS Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98157000-98162200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:98157200-98162200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:98159000-98162400	Bivalent Enhancer	Fetal Muscle Leg	muscle
4	chr10:98159200-98161800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:98159200-98161800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:98159400-98161800	Enhancers	Brain Angular Gyrus	brain
7	chr10:98159800-98172800	Weak transcription	Left Ventricle	heart
8	chr10:98160400-98161800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:98160400-98161800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:98160800-98161800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr10:98161200-98162000	Enhancers	Brain Substantia Nigra	brain
12	chr10:98161200-98162400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr10:98161200-98162800	Enhancers	Brain Cingulate Gyrus	brain
14	chr10:98161200-98162800	Enhancers	Brain Hippocampus Middle	brain
15	chr10:98161200-98167000	Weak transcription	Right Atrium	heart
16	chr10:98161400-98164800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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