Variant report

Variant	rs1925142
Chromosome Location	chr6:56078956-56078957
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10080450	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464328	1.00[AMR][1000 genomes]
rs9464339	1.00[AMR][1000 genomes]
rs9464345	1.00[AMR][1000 genomes]
rs9475559	1.00[AMR][1000 genomes]
rs9475562	1.00[AMR][1000 genomes]
rs9475568	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9475581	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9475584	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9475615	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56064000-56090800	Weak transcription	Fetal Lung	lung
2	chr6:56078400-56080000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:56078600-56079400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:56078600-56081000	Weak transcription	Aorta	Aorta
5	chr6:56078800-56080800	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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