Variant report

Variant	rs9475615
Chromosome Location	chr6:56063873-56063874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10080450	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1925142	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464328	1.00[AMR][1000 genomes]
rs9464339	1.00[AMR][1000 genomes]
rs9464345	1.00[AMR][1000 genomes]
rs9475559	1.00[AMR][1000 genomes]
rs9475562	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs9475568	1.00[AMR][1000 genomes]
rs9475581	1.00[AMR][1000 genomes]
rs9475584	1.00[AMR][1000 genomes]
rs9475634	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034037	chr6:55222409-56069600	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56060000-56064400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:56062000-56064800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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