Variant report

Variant	rs1925219
Chromosome Location	chr6:121713485-121713486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10080593	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10080648	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17083560	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17647008	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57946868	1.00[ASN][1000 genomes]
rs62427606	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67144741	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6901938	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933586	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73532213	1.00[ASN][1000 genomes]
rs73532218	1.00[ASN][1000 genomes]
rs73532223	1.00[ASN][1000 genomes]
rs73532226	1.00[ASN][1000 genomes]
rs73532231	1.00[ASN][1000 genomes]
rs7738364	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749457	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490227	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490229	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490230	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv830789	chr6:121581450-121732320	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1925219	PLSCR4	trans	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121713200-121715200	Enhancers	Fetal Intestine Small	intestine
2	chr6:121713400-121714800	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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