Variant report

Variant	rs57946868
Chromosome Location	chr6:121768710-121768711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10080593	1.00[ASN][1000 genomes]
rs10080648	1.00[ASN][1000 genomes]
rs17083560	1.00[ASN][1000 genomes]
rs17647008	1.00[ASN][1000 genomes]
rs1925219	1.00[ASN][1000 genomes]
rs62427606	1.00[ASN][1000 genomes]
rs67144741	1.00[ASN][1000 genomes]
rs6901938	1.00[ASN][1000 genomes]
rs6933586	1.00[ASN][1000 genomes]
rs73532213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73532215	0.85[AFR][1000 genomes]
rs73532218	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73532223	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73532226	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73532231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738364	1.00[ASN][1000 genomes]
rs7749457	1.00[ASN][1000 genomes]
rs9490227	1.00[ASN][1000 genomes]
rs9490229	1.00[ASN][1000 genomes]
rs9490230	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv969441	chr6:121768171-121770647	Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121759800-121769400	Weak transcription	Fetal Kidney	kidney
2	chr6:121764200-121771800	Weak transcription	Brain Anterior Caudate	brain
3	chr6:121764200-121775200	Weak transcription	Psoas Muscle	Psoas
4	chr6:121764600-121769000	Weak transcription	Brain Substantia Nigra	brain
5	chr6:121764600-121771600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:121765600-121769800	Weak transcription	A549	lung
7	chr6:121765600-121771400	Strong transcription	NHDF-Ad	bronchial
8	chr6:121765600-121771600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:121766000-121772200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:121766200-121769600	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:121766200-121769800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:121766200-121771200	Strong transcription	NH-A	brain
13	chr6:121766200-121772000	Strong transcription	HUVEC	blood vessel
14	chr6:121766400-121769800	Strong transcription	Osteobl	bone
15	chr6:121766400-121771400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:121766400-121771600	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:121766600-121771400	Strong transcription	H1 Cell Line	embryonic stem cell
18	chr6:121766600-121771600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:121766800-121770000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:121766800-121771400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:121767000-121771000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:121767000-121771400	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr6:121767000-121771400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:121767200-121771400	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:121767400-121769200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:121767400-121771000	Strong transcription	Stomach Smooth Muscle	stomach
27	chr6:121767600-121769200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:121767600-121769200	Strong transcription	Fetal Intestine Small	intestine
29	chr6:121767600-121769200	Strong transcription	Fetal Stomach	stomach
30	chr6:121767600-121769400	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:121767600-121769400	Strong transcription	Fetal Muscle Leg	muscle
32	chr6:121767600-121770000	Strong transcription	H9 Cell Line	embryonic stem cell
33	chr6:121767600-121770000	Strong transcription	Fetal Lung	lung
34	chr6:121767600-121770600	Strong transcription	Fetal Intestine Large	intestine
35	chr6:121767600-121771000	Strong transcription	Adipose Nuclei	Adipose
36	chr6:121767600-121771400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:121767600-121771600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:121767800-121769000	Strong transcription	Colon Smooth Muscle	Colon
39	chr6:121767800-121769200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:121767800-121769200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr6:121767800-121769400	Strong transcription	HSMM	muscle
42	chr6:121767800-121769600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:121767800-121769600	Strong transcription	Placenta	Placenta
44	chr6:121767800-121770200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
45	chr6:121767800-121771800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:121768000-121768800	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr6:121768000-121769200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:121768000-121769200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:121768000-121769200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:121768000-121769200	Strong transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links