Variant report

Variant	rs73532223
Chromosome Location	chr6:121759832-121759833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121753097..121755980-chr6:121757909..121760037,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10080593	1.00[ASN][1000 genomes]
rs10080648	1.00[ASN][1000 genomes]
rs17083560	1.00[ASN][1000 genomes]
rs17647008	1.00[ASN][1000 genomes]
rs1925219	1.00[ASN][1000 genomes]
rs57946868	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427606	1.00[ASN][1000 genomes]
rs67144741	1.00[ASN][1000 genomes]
rs6901938	1.00[ASN][1000 genomes]
rs6933586	1.00[ASN][1000 genomes]
rs73532213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73532215	0.85[AFR][1000 genomes]
rs73532218	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73532226	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73532231	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738364	1.00[ASN][1000 genomes]
rs7749457	1.00[ASN][1000 genomes]
rs9490227	1.00[ASN][1000 genomes]
rs9490229	1.00[ASN][1000 genomes]
rs9490230	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv3429176	chr6:121756880-121768144	Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121755600-121760000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:121756000-121760400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:121756000-121760800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:121756000-121761600	Active TSS	H1 Cell Line	embryonic stem cell
5	chr6:121756200-121761600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
6	chr6:121756200-121763600	Active TSS	Aorta	Aorta
7	chr6:121756200-121764200	Active TSS	Right Atrium	heart
8	chr6:121756400-121760400	Active TSS	A549	lung
9	chr6:121756400-121760600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:121756400-121760800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:121756400-121762400	Active TSS	Left Ventricle	heart
12	chr6:121756600-121760200	Active TSS	NH-A	brain
13	chr6:121756600-121760600	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr6:121756600-121760600	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr6:121756600-121760800	Active TSS	NHDF-Ad	bronchial
16	chr6:121756600-121761000	Active TSS	iPS-15b Cell Line	embryonic stem cell
17	chr6:121756600-121761200	Active TSS	iPS-18 Cell Line	embryonic stem cell
18	chr6:121756600-121761400	Active TSS	H9 Cell Line	embryonic stem cell
19	chr6:121756600-121761400	Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr6:121756600-121761600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:121756600-121761600	Active TSS	Ovary	ovary
22	chr6:121756600-121761600	Active TSS	Stomach Smooth Muscle	stomach
23	chr6:121756600-121761800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:121756600-121761800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:121756800-121760400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:121756800-121760400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:121756800-121760400	Active TSS	HMEC	breast
28	chr6:121756800-121761600	Active TSS	Right Ventricle	heart
29	chr6:121757400-121761400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:121758400-121760400	Active TSS	iPS-20b Cell Line	embryonic stem cell
31	chr6:121758800-121760400	Active TSS	Fetal Muscle Trunk	muscle
32	chr6:121759000-121761600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:121759000-121761600	Active TSS	Brain Anterior Caudate	brain
34	chr6:121759000-121762800	Weak transcription	Gastric	stomach
35	chr6:121759000-121763600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:121759200-121760000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:121759200-121761000	Active TSS	HUES6 Cell Line	embryonic stem cell
38	chr6:121759200-121761400	Active TSS	Brain Substantia Nigra	brain
39	chr6:121759400-121760800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:121759400-121762600	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr6:121759600-121760200	Active TSS	HUVEC	blood vessel
42	chr6:121759600-121760400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:121759600-121760400	Active TSS	Osteobl	bone
44	chr6:121759600-121760600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:121759600-121760800	Weak transcription	Colon Smooth Muscle	Colon
46	chr6:121759600-121761200	Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr6:121759600-121762400	Weak transcription	Esophagus	oesophagus
48	chr6:121759600-121762400	Weak transcription	Lung	lung
49	chr6:121759600-121768000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:121759800-121760000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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