Variant report

Variant	rs1927857
Chromosome Location	chr13:54095144-54095145
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1927849	0.90[ASN][1000 genomes]
rs1927850	0.92[ASN][1000 genomes]
rs1927851	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4625607	0.92[ASN][1000 genomes]
rs73192245	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7328372	0.92[ASN][1000 genomes]
rs8002318	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316628	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9527094	0.92[ASN][1000 genomes]
rs9527095	0.92[ASN][1000 genomes]
rs9527096	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9527099	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536447	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536448	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9536449	0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1927857	LPAR6	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54094400-54098800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr13:54094600-54097400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:54094600-54097800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:54094600-54099000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr13:54094600-54099000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr13:54094800-54098600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:54094800-54098800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr13:54094800-54099000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:54094800-54099200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr13:54095000-54098600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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