Variant report

Variant	rs1927858
Chromosome Location	chr13:54094776-54094777
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17576135	0.86[EUR][1000 genomes]
rs1927859	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28564485	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55670239	0.81[EUR][1000 genomes]
rs55949311	0.86[EUR][1000 genomes]
rs60180547	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6561730	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192250	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192256	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192266	0.86[EUR][1000 genomes]
rs73192268	0.87[EUR][1000 genomes]
rs73192275	0.87[EUR][1000 genomes]
rs73192288	0.81[EUR][1000 genomes]
rs7337604	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7992180	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596816	0.88[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54094200-54094800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:54094200-54094800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr13:54094200-54094800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr13:54094200-54095000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr13:54094400-54094800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr13:54094400-54098800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr13:54094600-54097400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:54094600-54097800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:54094600-54099000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr13:54094600-54099000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links