Variant report

Variant	rs7992180
Chromosome Location	chr13:54101741-54101742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17576135	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17576198	0.93[AMR][1000 genomes]
rs1927858	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927859	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28564485	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55670239	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55949311	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60180547	0.92[EUR][1000 genomes]
rs6561730	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192256	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192266	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73192268	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73192275	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73192288	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7335634	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7337604	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596816	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051015	chr13:54100401-54125854	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54097400-54102400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:54101600-54102200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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