Variant report

Variant	rs28564485
Chromosome Location	chr13:54089793-54089794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17576135	0.81[EUR][1000 genomes]
rs1927858	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927859	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55949311	0.81[EUR][1000 genomes]
rs60180547	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6561730	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192250	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192256	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192266	0.81[EUR][1000 genomes]
rs73192268	0.82[EUR][1000 genomes]
rs73192275	0.82[EUR][1000 genomes]
rs7337604	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7992180	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596816	0.90[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54088800-54094200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr13:54088800-54094200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:54088800-54094200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr13:54088800-54094200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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