Variant report

Variant	rs1938959
Chromosome Location	chr11:105628753-105628754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AASDHPPT-4	chr11:105628728-105628792	ucscGeneNc_uc001pje_2

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10895874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10895877	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11226838	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11226839	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11226853	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11226855	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11226859	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11822168	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12271335	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12284317	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12285171	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12288055	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12803424	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1938969	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1939150	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2000524	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2155042	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2226567	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3819071	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41375749	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4495866	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4556513	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4755117	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58664102	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs610160	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61900352	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900358	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61902560	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61902561	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61902562	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs636726	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs637648	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs652043	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs661148	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs688053	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7126373	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72985104	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs748353	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1829261	chr11:105614894-105698982	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv898357	chr11:105614894-105709856	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105626600-105634200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:105627600-105629000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:105628000-105629200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:105628000-105629600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:105628200-105629000	Enhancers	Primary hematopoietic stem cells	blood
6	chr11:105628600-105637400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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