Variant report

Variant	rs1938969
Chromosome Location	chr11:105637994-105637995
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10895874	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10895877	1.00[CEU][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11226838	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11226839	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11226853	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11226855	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11226859	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs11822168	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12271335	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12284317	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12285171	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12288055	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12803424	0.84[AMR][1000 genomes]
rs1938959	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1939150	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2000524	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2155042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226567	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3819071	1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.89[EUR][1000 genomes]
rs41375749	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4495866	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4556513	0.81[AMR][1000 genomes]
rs4754136	0.80[MEX][hapmap]
rs4755117	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58664102	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs610160	0.92[CEU][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs61900352	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61900358	0.82[EUR][1000 genomes]
rs61902560	0.89[EUR][1000 genomes]
rs61902561	0.89[EUR][1000 genomes]
rs61902562	0.81[EUR][1000 genomes]
rs636726	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs637648	0.88[EUR][1000 genomes]
rs652043	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs661148	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs688053	0.92[CEU][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs7126373	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72985104	0.86[AMR][1000 genomes]
rs748353	0.92[CEU][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1829261	chr11:105614894-105698982	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv898357	chr11:105614894-105709856	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105634600-105638000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:105634600-105638400	Weak transcription	Brain Substantia Nigra	brain
3	chr11:105634600-105653800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:105637400-105638800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr11:105637400-105638800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:105637400-105639800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:105637600-105638200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr11:105637600-105639400	Enhancers	Brain Germinal Matrix	brain
9	chr11:105637800-105638200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:105637800-105638200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:105637800-105638800	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links