Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11659729	0.87[EUR][1000 genomes]
rs11661622	0.87[EUR][1000 genomes]
rs11662807	0.87[EUR][1000 genomes]
rs11663911	0.87[EUR][1000 genomes]
rs11664656	0.87[EUR][1000 genomes]
rs1353568	0.87[EUR][1000 genomes]
rs1557326	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17699120	0.89[EUR][1000 genomes]
rs17771358	0.83[ASN][1000 genomes]
rs17777949	0.87[EUR][1000 genomes]
rs35975470	0.85[EUR][1000 genomes]
rs4146444	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4890702	0.89[EUR][1000 genomes]
rs4890709	0.87[EUR][1000 genomes]
rs5012143	0.87[EUR][1000 genomes]
rs62081961	0.87[EUR][1000 genomes]
rs7229044	0.83[ASN][1000 genomes]
rs7235916	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7237359	0.87[EUR][1000 genomes]
rs7243187	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9962472	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv833629	chr18:38791940-38959145	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:38806200-38808200	Enhancers	Fetal Brain Female	brain
2	chr18:38807200-38808000	Weak transcription	NHEK	skin
3	chr18:38807200-38808200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr18:38807800-38808600	Enhancers	HMEC	breast
5	chr18:38807800-38811400	Weak transcription	Fetal Brain Male	brain

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