Variant report

Variant	rs4146444
Chromosome Location	chr18:38839350-38839351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11659729	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11661622	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11662807	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11663863	0.82[ASN][1000 genomes]
rs11663911	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11664656	0.90[EUR][1000 genomes]
rs1353568	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1557326	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17699120	0.89[EUR][1000 genomes]
rs17777949	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1941578	0.82[ASN][1000 genomes]
rs1941587	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35975470	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4890702	0.89[EUR][1000 genomes]
rs4890709	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5012143	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62081961	0.90[EUR][1000 genomes]
rs7235916	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7237359	0.90[EUR][1000 genomes]
rs7243187	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9962472	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv833629	chr18:38791940-38959145	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv833630	chr18:38817119-39012222	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3432090	chr18:38837354-38839702	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:38837400-38848800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links