Variant report
| Variant | rs7243187 |
|---|---|
| Chromosome Location | chr18:38803713-38803714 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11659729 | 0.87[EUR][1000 genomes] |
| rs11661622 | 0.87[EUR][1000 genomes] |
| rs11662807 | 0.87[EUR][1000 genomes] |
| rs11663911 | 0.87[EUR][1000 genomes] |
| rs11664656 | 0.87[EUR][1000 genomes] |
| rs1353568 | 0.87[EUR][1000 genomes] |
| rs1557326 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17699120 | 0.88[EUR][1000 genomes] |
| rs17771358 | 0.83[ASN][1000 genomes] |
| rs17777949 | 0.87[EUR][1000 genomes] |
| rs1941587 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35975470 | 0.84[EUR][1000 genomes] |
| rs4146444 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4890702 | 0.88[EUR][1000 genomes] |
| rs4890709 | 0.87[EUR][1000 genomes] |
| rs5012143 | 0.87[EUR][1000 genomes] |
| rs62081961 | 0.87[EUR][1000 genomes] |
| rs7229044 | 0.83[ASN][1000 genomes] |
| rs7235916 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7237359 | 0.87[EUR][1000 genomes] |
| rs9962472 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv909564 | chr18:38739067-39179256 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1066869 | chr18:38742896-39680723 | Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv543685 | chr18:38742896-39680723 | Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv833629 | chr18:38791940-38959145 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:38803200-38805600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
