Variant report

Variant	rs1943533
Chromosome Location	chr18:28362789-28362790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12608126	0.86[AFR][1000 genomes]
rs1943541	0.82[AFR][1000 genomes]
rs2000804	0.82[AFR][1000 genomes]
rs2000805	0.82[AFR][1000 genomes]
rs2591098	0.91[AFR][1000 genomes]
rs2591100	0.82[AFR][1000 genomes]
rs2733115	0.87[AFR][1000 genomes]
rs2733119	0.81[AFR][1000 genomes]
rs2733134	0.86[AFR][1000 genomes]
rs2733157	0.81[AFR][1000 genomes]
rs2733158	0.81[AFR][1000 genomes]
rs2850275	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428675	chr18:28278505-28444515	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv909514	chr18:28321803-28420334	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv961125	chr18:28354817-28370499	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28360400-28362800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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