Variant report

Variant	rs2733134
Chromosome Location	chr18:28344011-28344012
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12608126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1943530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1943533	0.86[AFR][1000 genomes]
rs1943578	0.81[AFR][1000 genomes]
rs1943579	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1943580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1943581	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1943582	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2212962	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2591098	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2591100	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2678801	0.92[YRI][hapmap]
rs2733115	0.82[AFR][1000 genomes]
rs2850276	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428675	chr18:28278505-28444515	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv909514	chr18:28321803-28420334	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28342400-28344400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
2	chr18:28342400-28345000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr18:28343000-28344400	Enhancers	Fetal Intestine Small	intestine
4	chr18:28343000-28345000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr18:28343200-28344400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr18:28343200-28344400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr18:28343200-28344400	Enhancers	Fetal Lung	lung
8	chr18:28343400-28344400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr18:28343400-28344400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:28343400-28344400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr18:28343400-28344800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr18:28343600-28344400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr18:28343600-28344400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr18:28343800-28344200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr18:28343800-28344400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr18:28343800-28345000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr18:28343800-28345000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr18:28344000-28344200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr18:28344000-28344200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
20	chr18:28344000-28344400	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr18:28344000-28344400	Enhancers	Fetal Kidney	kidney
22	chr18:28344000-28344800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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