Variant report

Variant	rs1943579
Chromosome Location	chr18:28343157-28343158
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12608126	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1943530	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1943580	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1943581	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1943582	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2212962	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2591098	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2591100	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2678801	0.86[YRI][hapmap]
rs2733134	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428675	chr18:28278505-28444515	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv909514	chr18:28321803-28420334	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28340000-28343400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:28342000-28343400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
3	chr18:28342400-28343600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr18:28342400-28344400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr18:28342400-28345000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr18:28342600-28343200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
7	chr18:28342600-28343600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
8	chr18:28342600-28343600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr18:28342800-28343200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr18:28342800-28343600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr18:28343000-28343200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
12	chr18:28343000-28344000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr18:28343000-28344400	Enhancers	Fetal Intestine Small	intestine
14	chr18:28343000-28345000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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