Variant report

Variant	rs1943581
Chromosome Location	chr18:28344456-28344457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12608126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1943530	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1943579	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1943580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1943582	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2212962	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2591098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2591100	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2678801	0.86[YRI][hapmap]
rs2733134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428675	chr18:28278505-28444515	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv909514	chr18:28321803-28420334	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28342400-28345000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr18:28343000-28345000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr18:28343400-28344800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr18:28343800-28345000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr18:28343800-28345000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr18:28344000-28344800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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