Variant report
| Variant | rs2678801 |
|---|---|
| Chromosome Location | chr18:28282744-28282745 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000266196 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs1943578 | 0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2027732 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2226848 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2591100 | 0.81[AFR][1000 genomes] |
| rs2591105 | 0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2850276 | 0.88[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs56074435 | 0.87[ASN][1000 genomes] |
| rs72915979 | 0.87[ASN][1000 genomes] |
| rs72929309 | 0.80[ASN][1000 genomes] |
| rs72929328 | 0.87[ASN][1000 genomes] |
| rs72929330 | 0.87[ASN][1000 genomes] |
| rs72929336 | 0.87[ASN][1000 genomes] |
| rs72929339 | 0.87[ASN][1000 genomes] |
| rs72929342 | 0.87[ASN][1000 genomes] |
| rs72929352 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428675 | chr18:28278505-28444515 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv10037 | chr18:28279458-28283863 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv2421334 | chr18:28281252-28283411 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv515523 | chr18:28281252-28283411 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:28282600-28283400 | Enhancers | HUES48 Cell Line | embryonic stem cell |
