Variant report

Variant	rs72929330
Chromosome Location	chr18:28204416-28204417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2226848	0.87[ASN][1000 genomes]
rs2678801	0.87[ASN][1000 genomes]
rs56074435	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72915979	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929309	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72929322	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72929328	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929336	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929339	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929342	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929352	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833612	chr18:28088780-28251576	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28199600-28215000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:28202400-28204800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr18:28202400-28205000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr18:28203800-28204600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr18:28204000-28205000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr18:28204400-28205000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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