Variant report

Variant	rs72929328
Chromosome Location	chr18:28203458-28203459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2226848	0.87[ASN][1000 genomes]
rs2678801	0.87[ASN][1000 genomes]
rs56074435	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72915979	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929309	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72929322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72929330	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929336	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929339	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929342	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72929352	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833612	chr18:28088780-28251576	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28199600-28215000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:28201800-28204400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
3	chr18:28202200-28203600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr18:28202400-28204800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr18:28202400-28205000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr18:28203000-28203800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr18:28203200-28204000	Enhancers	Placenta Amnion	Placenta Amnion
8	chr18:28203200-28204200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr18:28203200-28204400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr18:28203400-28203600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr18:28203400-28203800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr18:28203400-28204000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr18:28203400-28204200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
14	chr18:28203400-28204200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr18:28203400-28204400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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