Variant report

Variant	rs72929322
Chromosome Location	chr18:28196159-28196160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56074435	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72915979	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72929309	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72929328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72929330	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72929336	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72929339	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72929342	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72929352	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv576600	chr18:27423375-28197518	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv833612	chr18:28088780-28251576	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28193800-28198400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr18:28193800-28198600	Weak transcription	K562	blood
3	chr18:28193800-28198800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr18:28193800-28199000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr18:28193800-28199200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr18:28193800-28201600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr18:28193800-28203400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr18:28194000-28198800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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