Variant report

Variant	rs2000804
Chromosome Location	chr18:28393707-28393708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1547873	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16961031	1.00[CHB][hapmap]
rs17711668	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943533	0.82[AFR][1000 genomes]
rs1943538	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2572365	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2591118	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2591119	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2591120	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2678801	0.92[YRI][hapmap]
rs2733115	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733119	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733157	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733158	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2850269	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2850275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56025033	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62088997	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62089010	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62089022	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62089023	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72923705	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9807744	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428675	chr18:28278505-28444515	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv909514	chr18:28321803-28420334	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28393000-28393800	Weak transcription	Fetal Lung	lung

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