Variant report
| Variant | rs56025033 |
|---|---|
| Chromosome Location | chr18:28415618-28415619 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1547873 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17711668 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1943538 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1943541 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2000804 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2000805 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2572365 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2591118 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2591119 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2591120 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2733115 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2733119 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2733157 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2733158 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2850269 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2850275 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62088997 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62089010 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62089022 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62089023 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72923705 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428675 | chr18:28278505-28444515 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv909514 | chr18:28321803-28420334 | Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:28415200-28416000 | Enhancers | Brain Cingulate Gyrus | brain |
