Variant report

Variant	rs62089010
Chromosome Location	chr1:36663174-36663175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1547873	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17711668	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943538	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1943541	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000804	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2000805	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2572365	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2591118	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2591119	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2591120	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733115	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733119	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733157	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733158	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2850269	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2850275	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56025033	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62088997	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62089022	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62089023	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72923705	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916208	chr1:36399818-37287600	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
2	nsv834691	chr1:36524738-36704141	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv1829837	chr1:36603806-36666061	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv545994	chr1:36613380-36710038	Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv545995	chr1:36615669-36752410	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
6	esv2757729	chr1:36620139-36887088	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	esv2758931	chr1:36620139-36887088	Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
8	nsv834702	chr1:36656231-36857332	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:36653800-36668800	Weak transcription	HSMMtube	muscle
2	chr1:36653800-36669000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:36654000-36665400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:36654200-36665600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:36654200-36666000	Weak transcription	HSMM	muscle
6	chr1:36654400-36665600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:36662600-36663200	Enhancers	K562	blood
8	chr1:36662600-36664600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:36662800-36665600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:36662800-36668800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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