Variant report
| Variant | rs62089023 |
|---|---|
| Chromosome Location | chr18:28434153-28434154 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:28430775..28434572-chr18:28435990..28439258,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1547873 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17711668 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1943538 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1943541 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2000804 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2000805 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2572365 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2591118 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2591119 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2591120 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2733115 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2733119 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2733157 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2733158 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2850269 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2850275 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56025033 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62088997 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62089010 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62089022 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72923705 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428675 | chr18:28278505-28444515 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:28433200-28443000 | Weak transcription | Fetal Brain Male | brain |
