Variant report

Variant	rs1946486
Chromosome Location	chr5:151548273-151548274
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11167572	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11747825	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs154687	0.83[EUR][1000 genomes]
rs17735620	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs253731	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs29839	0.84[EUR][1000 genomes]
rs29840	0.84[EUR][1000 genomes]
rs29841	0.82[EUR][1000 genomes]
rs29844	0.82[EUR][1000 genomes]
rs40559	0.84[EUR][1000 genomes]
rs434926	0.82[EUR][1000 genomes]
rs62396575	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1023828	chr5:151522149-151956217	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151547200-151549000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr5:151547400-151548400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr5:151547400-151548600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:151547400-151549200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:151547600-151548400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr5:151547600-151548800	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr5:151547600-151549400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr5:151548000-151548800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr5:151548000-151550000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:151548200-151548600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:151548200-151549800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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