Variant report

Variant	rs29839
Chromosome Location	chr5:151505289-151505290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11167572	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11747825	0.84[EUR][1000 genomes]
rs154100	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs154101	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs154104	0.90[AMR][1000 genomes]
rs154105	0.87[AMR][1000 genomes]
rs154687	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17735620	0.84[EUR][1000 genomes]
rs1946486	0.84[EUR][1000 genomes]
rs253731	0.84[EUR][1000 genomes]
rs256157	0.81[EUR][1000 genomes]
rs29840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs29841	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs29844	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs40559	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs434926	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs528346	0.87[AMR][1000 genomes]
rs62396575	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883039	chr5:151471642-151540888	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv5072	chr5:151490271-151530419	Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151502600-151505600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:151502600-151506200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:151502800-151505600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:151504400-151505400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:151504600-151505400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:151505000-151505600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:151505200-151505600	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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