Variant report

Variant	rs29844
Chromosome Location	chr5:151499107-151499108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11167572	0.83[EUR][1000 genomes]
rs11747825	0.82[EUR][1000 genomes]
rs154100	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs154101	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs154104	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs154105	0.87[AMR][1000 genomes]
rs154687	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17735620	0.82[EUR][1000 genomes]
rs1946486	0.82[EUR][1000 genomes]
rs253731	0.82[EUR][1000 genomes]
rs29839	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs29840	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs29841	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs40559	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs434926	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs528346	0.87[AMR][1000 genomes]
rs62396575	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020899	chr5:151412785-151516788	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760935	chr5:151463117-151586051	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv883039	chr5:151471642-151540888	Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv883040	chr5:151471642-151596273	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv5072	chr5:151490271-151530419	Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151497600-151499400	Enhancers	Fetal Lung	lung
2	chr5:151497600-151499800	Enhancers	Fetal Muscle Leg	muscle
3	chr5:151498000-151499400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:151498000-151499400	Enhancers	HSMMtube	muscle
5	chr5:151498000-151499600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:151498000-151499800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:151498200-151499200	Enhancers	Brain Germinal Matrix	brain
8	chr5:151498600-151499200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:151498600-151499200	Enhancers	Fetal Brain Female	brain
10	chr5:151498600-151499200	Enhancers	Ovary	ovary
11	chr5:151498600-151499200	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr5:151498800-151499200	Enhancers	Fetal Brain Male	brain
13	chr5:151498800-151499200	Enhancers	Right Atrium	heart
14	chr5:151499000-151499200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr5:151499000-151499400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links