Variant report
| Variant | rs1950332 |
|---|---|
| Chromosome Location | chr14:39956060-39956061 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1074117 | 1.00[AMR][1000 genomes] |
| rs11623676 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17109123 | 1.00[AMR][1000 genomes] |
| rs17109135 | 0.80[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs17109146 | 1.00[AMR][1000 genomes] |
| rs17109165 | 0.80[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17109170 | 0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17109216 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17109235 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1955715 | 1.00[AMR][1000 genomes] |
| rs1955717 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1955723 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1955728 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2057140 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4438203 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4899281 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4899288 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4899299 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4902644 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57704406 | 1.00[AMR][1000 genomes] |
| rs59310392 | 1.00[AMR][1000 genomes] |
| rs7142121 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs719456 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8005801 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8012131 | 1.00[AMR][1000 genomes] |
| rs8016370 | 1.00[AMR][1000 genomes] |
| rs926805 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3523177 | chr14:39875036-40128325 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | esv3523178 | chr14:39875036-40128325 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| 3 | nsv832774 | chr14:39897746-40060823 | Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| 4 | nsv915558 | chr14:39944831-40165370 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:39952400-39958000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr14:39955400-39957800 | Weak transcription | Brain Hippocampus Middle | brain |
