Variant report

Variant	rs4438203
Chromosome Location	chr14:39959514-39959515
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTAGE5-5	chr14:39957187-39959594	NONHSAT036547

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1074117	1.00[AMR][1000 genomes]
rs11623676	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109123	1.00[AMR][1000 genomes]
rs17109135	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs17109146	1.00[AMR][1000 genomes]
rs17109165	0.80[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109170	0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109216	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109235	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1950332	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1955715	1.00[AMR][1000 genomes]
rs1955717	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1955723	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1955728	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2057140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899281	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899288	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899299	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902644	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57704406	1.00[AMR][1000 genomes]
rs59310392	1.00[AMR][1000 genomes]
rs7142121	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs719456	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8005801	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8012131	1.00[AMR][1000 genomes]
rs8016370	1.00[AMR][1000 genomes]
rs926805	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv915558	chr14:39944831-40165370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv456212	chr14:39957437-40096888	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv564418	chr14:39957437-40096888	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39957200-39959600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:39958200-39960600	Weak transcription	Brain Hippocampus Middle	brain
3	chr14:39958200-39964800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr14:39958200-39968600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:39958400-39960400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:39958400-39960400	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:39958600-39960600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:39958800-39960600	Weak transcription	Brain Germinal Matrix	brain
9	chr14:39959200-39959600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr14:39959200-39960600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:39959400-39959800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:39959400-39960600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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