Variant report

Variant	rs4899288
Chromosome Location	chr14:39944791-39944792
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1074117	1.00[AMR][1000 genomes]
rs11623676	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109123	0.86[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs17109135	1.00[AMR][1000 genomes]
rs17109146	1.00[AMR][1000 genomes]
rs17109165	1.00[AMR][1000 genomes]
rs17109170	0.89[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109216	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17109235	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1950332	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1955715	1.00[AMR][1000 genomes]
rs1955717	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1955723	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1955728	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2057140	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4438203	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899281	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4899299	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4902644	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57704406	1.00[AMR][1000 genomes]
rs59310392	1.00[AMR][1000 genomes]
rs7142121	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs719456	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8005801	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8012131	1.00[AMR][1000 genomes]
rs8016370	1.00[AMR][1000 genomes]
rs926805	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39939000-39946000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:39939000-39954600	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links