Variant report

Variant	rs195435
Chromosome Location	chr6:37363911-37363912
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37358839..37361395-chr6:37362203..37365759,3	K562	blood:
2	chr6:37360851..37366241-chr6:37366774..37371728,6	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs195428	0.94[AFR][1000 genomes]
rs195430	0.83[AFR][1000 genomes]
rs195431	0.82[AFR][1000 genomes]
rs195433	0.95[AFR][1000 genomes]
rs195441	0.85[AFR][1000 genomes]
rs195442	0.92[AFR][1000 genomes]
rs449637	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520294	chr6:37360557-37380324	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37324000-37366800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:37343000-37365000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:37350000-37368600	Weak transcription	Fetal Heart	heart
4	chr6:37356200-37367400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:37357600-37364400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:37359000-37364600	Weak transcription	NHDF-Ad	bronchial
7	chr6:37359000-37365000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr6:37359000-37372600	Weak transcription	Stomach Mucosa	stomach
9	chr6:37359200-37364200	Weak transcription	NHLF	lung
10	chr6:37359200-37364600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:37359200-37364600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:37359200-37365000	Weak transcription	A549	lung
13	chr6:37359200-37367000	Weak transcription	Brain Angular Gyrus	brain
14	chr6:37359200-37367000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:37359400-37364400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:37359400-37364600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:37359400-37368400	Weak transcription	Fetal Intestine Large	intestine
18	chr6:37359600-37364800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:37359600-37374000	Weak transcription	NHEK	skin
20	chr6:37359800-37365800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:37360200-37364200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:37360200-37364600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:37360400-37364600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:37360600-37364800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:37360600-37366200	Weak transcription	Brain Germinal Matrix	brain
26	chr6:37360800-37364000	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:37360800-37367000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:37361000-37364800	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:37361000-37364800	Weak transcription	Thymus	Thymus
30	chr6:37361000-37365200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:37361000-37365200	Weak transcription	HSMM	muscle
32	chr6:37361000-37365600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr6:37361200-37364200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr6:37361200-37364400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:37361200-37364400	Weak transcription	Osteobl	bone
36	chr6:37361200-37364600	Weak transcription	Fetal Thymus	thymus
37	chr6:37361200-37364800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:37361200-37364800	Weak transcription	Brain Hippocampus Middle	brain
39	chr6:37361200-37368400	Weak transcription	Gastric	stomach
40	chr6:37361600-37364000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:37361600-37364200	Weak transcription	Left Ventricle	heart
42	chr6:37361600-37364400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:37361600-37364400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:37361600-37364600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:37361600-37364800	Weak transcription	HepG2	liver
46	chr6:37361800-37364000	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr6:37361800-37364000	Weak transcription	Liver	Liver
48	chr6:37361800-37364600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:37361800-37364600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr6:37361800-37364800	Weak transcription	Aorta	Aorta

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