Variant report

Variant	rs195433
Chromosome Location	chr6:37359946-37359947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37348008..37350408-chr6:37358756..37360688,2	K562	blood:
2	chr6:37354319..37358453-chr6:37358678..37362908,5	K562	blood:
3	chr6:37358839..37361395-chr6:37362203..37365759,3	K562	blood:
4	chr6:37357575..37360002-chr6:37390264..37392492,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs195374	1.00[EUR][1000 genomes]
rs195375	1.00[EUR][1000 genomes]
rs195377	0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs195379	1.00[MEX][hapmap]
rs195381	1.00[MEX][hapmap]
rs195384	1.00[MEX][hapmap]
rs195386	1.00[MEX][hapmap]
rs195428	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs195430	0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs195431	0.84[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs195435	0.95[AFR][1000 genomes]
rs195439	1.00[EUR][1000 genomes]
rs195441	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs195442	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2646928	1.00[EUR][1000 genomes]
rs2797791	1.00[EUR][1000 genomes]
rs2797792	1.00[EUR][1000 genomes]
rs2989591	1.00[EUR][1000 genomes]
rs449637	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56068882	1.00[EUR][1000 genomes]
rs58839558	1.00[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37324000-37366800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:37328000-37360800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:37328000-37361800	Strong transcription	Dnd41	blood
4	chr6:37328600-37361200	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr6:37334400-37363200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:37337400-37362600	Weak transcription	Psoas Muscle	Psoas
7	chr6:37337600-37361000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:37339200-37361000	Weak transcription	Fetal Brain Male	brain
11	chr6:37339800-37361400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:37342400-37362000	Strong transcription	Adipose Nuclei	Adipose
13	chr6:37343000-37363600	Strong transcription	Fetal Stomach	stomach
14	chr6:37343000-37365000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr6:37344000-37361800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:37345600-37363400	Weak transcription	HUVEC	blood vessel
17	chr6:37346000-37362400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:37347600-37363000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:37349800-37360400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:37349800-37363800	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:37350000-37368600	Weak transcription	Fetal Heart	heart
22	chr6:37352200-37360600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:37352600-37360400	Weak transcription	Colonic Mucosa	Colon
24	chr6:37352600-37363400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:37353800-37361200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:37353800-37361200	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:37353800-37361800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:37353800-37362000	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr6:37353800-37362000	Strong transcription	Primary B cells from cord blood	blood
30	chr6:37353800-37363400	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr6:37353800-37363800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:37354000-37361000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:37354000-37361200	Strong transcription	Fetal Thymus	thymus
34	chr6:37354000-37361600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:37354000-37361600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:37354000-37361600	Strong transcription	HepG2	liver
37	chr6:37354000-37363000	Strong transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:37354200-37360200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:37354200-37360400	Strong transcription	Liver	Liver
40	chr6:37354200-37361200	Strong transcription	Primary B cells from peripheral blood	blood
41	chr6:37354200-37361600	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr6:37354400-37361200	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr6:37355200-37360800	Strong transcription	Duodenum Mucosa	Duodenum
44	chr6:37355600-37360800	Strong transcription	Primary hematopoietic stem cells	blood
45	chr6:37355600-37361400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:37355600-37361600	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr6:37355600-37362800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:37355800-37361600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr6:37355800-37361800	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr6:37355800-37361800	Strong transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links