Variant report

Variant	rs58839558
Chromosome Location	chr6:37455205-37455206
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37452990..37456369-chr6:37463812..37466534,3	K562	blood:
2	chr6:37321870..37324208-chr6:37454012..37456145,2	K562	blood:
3	chr6:37347893..37350321-chr6:37453148..37456084,2	K562	blood:
4	chr6:37451407..37454249-chr6:37454793..37456445,3	K562	blood:
5	chr6:37454869..37462977-chr6:37463391..37469245,23	K562	blood:
6	chr6:37440015..37443370-chr6:37454781..37457774,3	K562	blood:
7	chr6:37448384..37450542-chr6:37453488..37455291,3	MCF-7	breast:
8	chr6:37454885..37456493-chr6:37473067..37475104,2	K562	blood:
9	chr6:37454324..37456090-chr6:37463248..37465258,2	MCF-7	breast:
10	chr6:37444354..37450261-chr6:37451286..37455412,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198937	Chromatin interaction
ENSG00000137200	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs195374	1.00[EUR][1000 genomes]
rs195375	1.00[EUR][1000 genomes]
rs195377	1.00[EUR][1000 genomes]
rs195428	1.00[EUR][1000 genomes]
rs195430	1.00[EUR][1000 genomes]
rs195431	1.00[EUR][1000 genomes]
rs195433	1.00[EUR][1000 genomes]
rs195439	1.00[EUR][1000 genomes]
rs195441	1.00[EUR][1000 genomes]
rs195442	1.00[EUR][1000 genomes]
rs2646928	1.00[EUR][1000 genomes]
rs2797791	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2797792	1.00[EUR][1000 genomes]
rs2989591	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs449637	1.00[EUR][1000 genomes]
rs56068882	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37436200-37457200	Strong transcription	Primary T cells from cord blood	blood
2	chr6:37439200-37456400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:37439200-37456400	Strong transcription	Fetal Intestine Small	intestine
4	chr6:37442000-37458800	Weak transcription	HUVEC	blood vessel
5	chr6:37443600-37466600	Weak transcription	A549	lung
6	chr6:37446800-37466600	Weak transcription	Hela-S3	cervix
7	chr6:37447600-37466800	Weak transcription	HSMM	muscle
8	chr6:37448400-37466800	Weak transcription	Stomach Mucosa	stomach
9	chr6:37448800-37457400	Weak transcription	Psoas Muscle	Psoas
10	chr6:37448800-37457800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:37449200-37457400	Weak transcription	NH-A	brain
12	chr6:37449400-37457200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:37449600-37459800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:37449800-37457200	Strong transcription	Fetal Stomach	stomach
15	chr6:37449800-37457400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:37449800-37457600	Weak transcription	Brain Anterior Caudate	brain
17	chr6:37450000-37457200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:37450200-37457400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:37450200-37467200	Weak transcription	Small Intestine	intestine
20	chr6:37450400-37455600	Weak transcription	Fetal Heart	heart
21	chr6:37450400-37455800	Weak transcription	Right Atrium	heart
22	chr6:37451000-37457800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:37451200-37456200	Genic enhancers	Primary T cells fromperipheralblood	blood
24	chr6:37451200-37458400	Weak transcription	Brain Angular Gyrus	brain
25	chr6:37451200-37459600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:37451200-37459800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr6:37451400-37457200	Weak transcription	Left Ventricle	heart
28	chr6:37451400-37457800	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:37451400-37458600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:37451400-37459200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:37451400-37465600	Weak transcription	Colonic Mucosa	Colon
32	chr6:37451600-37455400	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:37451600-37455600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr6:37451600-37455800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:37451600-37457400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:37451600-37457600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:37451600-37458400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr6:37451600-37466800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:37451600-37467000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:37451800-37457200	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr6:37451800-37457400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:37451800-37459000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:37451800-37459000	Weak transcription	Liver	Liver
44	chr6:37451800-37462400	Enhancers	Fetal Brain Male	brain
45	chr6:37451800-37466600	Weak transcription	Primary B cells from cord blood	blood
46	chr6:37451800-37466800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr6:37452000-37455400	Weak transcription	Pancreas	Pancrea
48	chr6:37452000-37455800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:37452000-37455800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr6:37452000-37456000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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