Variant report

Variant	rs195377
Chromosome Location	chr6:37343846-37343847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37323470..37325432-chr6:37341488..37344203,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs195374	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs195375	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs195428	0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs195430	0.84[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs195431	0.94[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs195433	0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs195439	1.00[EUR][1000 genomes]
rs195441	1.00[EUR][1000 genomes]
rs195442	0.84[YRI][hapmap];1.00[EUR][1000 genomes]
rs2646928	1.00[EUR][1000 genomes]
rs2797791	1.00[EUR][1000 genomes]
rs2797792	1.00[EUR][1000 genomes]
rs2989591	1.00[EUR][1000 genomes]
rs449637	1.00[EUR][1000 genomes]
rs56068882	1.00[EUR][1000 genomes]
rs58839558	1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37323000-37351400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:37323400-37349800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:37323400-37356800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:37324000-37366800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:37328000-37360800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:37328000-37361800	Strong transcription	Dnd41	blood
7	chr6:37328600-37361200	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr6:37334400-37363200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:37334600-37352600	Strong transcription	Primary T cells from cord blood	blood
10	chr6:37334600-37352600	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr6:37334600-37353000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:37335400-37352400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:37335600-37345000	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr6:37335600-37351600	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:37335800-37347400	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:37335800-37348200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:37336000-37351600	Strong transcription	Stomach Smooth Muscle	stomach
18	chr6:37337000-37348800	Weak transcription	NHDF-Ad	bronchial
19	chr6:37337200-37353000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:37337400-37357000	Weak transcription	Stomach Mucosa	stomach
21	chr6:37337400-37362600	Weak transcription	Psoas Muscle	Psoas
22	chr6:37337600-37352000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:37337600-37354000	Weak transcription	Right Ventricle	heart
24	chr6:37337600-37361000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:37337800-37345200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr6:37337800-37353000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:37338000-37344200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:37338200-37345400	Weak transcription	A549	lung
31	chr6:37338400-37344600	Weak transcription	Osteobl	bone
32	chr6:37338400-37348600	Weak transcription	HSMMtube	muscle
33	chr6:37338600-37349400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr6:37339000-37346000	Strong transcription	HepG2	liver
35	chr6:37339200-37358400	Weak transcription	Small Intestine	intestine
36	chr6:37339200-37361000	Weak transcription	Fetal Brain Male	brain
37	chr6:37339400-37349000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:37339600-37344600	Weak transcription	HUVEC	blood vessel
39	chr6:37339600-37349200	Weak transcription	Aorta	Aorta
40	chr6:37339600-37352000	Weak transcription	Colonic Mucosa	Colon
41	chr6:37339600-37354000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:37339600-37358600	Weak transcription	Gastric	stomach
43	chr6:37339800-37344200	Weak transcription	Brain Cingulate Gyrus	brain
44	chr6:37339800-37344200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:37339800-37347600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr6:37339800-37347600	Weak transcription	Spleen	Spleen
47	chr6:37339800-37348600	Weak transcription	Brain Anterior Caudate	brain
48	chr6:37339800-37349600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr6:37339800-37349800	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr6:37339800-37355200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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