Variant report

Variant	rs195431
Chromosome Location	chr6:37357104-37357105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37347312..37349865-chr6:37356233..37358179,2	K562	blood:
2	chr6:37347312..37349055-chr6:37356679..37358607,2	K562	blood:
3	chr6:37354319..37358453-chr6:37358678..37362908,5	K562	blood:
4	chr6:37332917..37335024-chr6:37356571..37358626,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs195374	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs195375	1.00[EUR][1000 genomes]
rs195377	0.94[YRI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs195379	1.00[MEX][hapmap]
rs195381	1.00[MEX][hapmap]
rs195384	1.00[MEX][hapmap]
rs195386	1.00[MEX][hapmap]
rs195428	0.84[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs195430	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs195433	0.84[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs195435	0.82[AFR][1000 genomes]
rs195439	1.00[EUR][1000 genomes]
rs195441	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs195442	1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2646928	1.00[EUR][1000 genomes]
rs2797791	1.00[EUR][1000 genomes]
rs2797792	1.00[EUR][1000 genomes]
rs2989591	1.00[EUR][1000 genomes]
rs449637	0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56068882	1.00[EUR][1000 genomes]
rs58839558	1.00[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37324000-37366800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:37328000-37360800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:37328000-37361800	Strong transcription	Dnd41	blood
4	chr6:37328600-37361200	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr6:37334400-37363200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:37337400-37362600	Weak transcription	Psoas Muscle	Psoas
7	chr6:37337600-37361000	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:37337600-37363200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:37339200-37358400	Weak transcription	Small Intestine	intestine
11	chr6:37339200-37361000	Weak transcription	Fetal Brain Male	brain
12	chr6:37339600-37358600	Weak transcription	Gastric	stomach
13	chr6:37339800-37358200	Weak transcription	Pancreas	Pancrea
14	chr6:37339800-37361400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:37340400-37358800	Weak transcription	Fetal Kidney	kidney
16	chr6:37341400-37359400	Strong transcription	Fetal Muscle Trunk	muscle
17	chr6:37342400-37362000	Strong transcription	Adipose Nuclei	Adipose
18	chr6:37342600-37358200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:37343000-37363600	Strong transcription	Fetal Stomach	stomach
20	chr6:37343000-37365000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr6:37343400-37358200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr6:37344000-37357200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr6:37344000-37361800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr6:37345600-37363400	Weak transcription	HUVEC	blood vessel
25	chr6:37346000-37362400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr6:37347600-37359200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:37347600-37359400	Strong transcription	GM12878-XiMat	blood
28	chr6:37347600-37359800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:37347600-37363000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:37347800-37359200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:37348400-37359200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr6:37349400-37358800	Weak transcription	NHDF-Ad	bronchial
33	chr6:37349800-37360400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:37349800-37363800	Weak transcription	Colon Smooth Muscle	Colon
35	chr6:37350000-37368600	Weak transcription	Fetal Heart	heart
36	chr6:37350400-37358200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:37350800-37358400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:37352200-37360600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:37352400-37357200	Weak transcription	Esophagus	oesophagus
40	chr6:37352400-37358400	Weak transcription	Brain Hippocampus Middle	brain
41	chr6:37352600-37357600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr6:37352600-37357600	Weak transcription	Brain Angular Gyrus	brain
43	chr6:37352600-37360400	Weak transcription	Colonic Mucosa	Colon
44	chr6:37352600-37363400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr6:37352800-37358200	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr6:37352800-37358400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr6:37353200-37359600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr6:37353800-37359400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:37353800-37359400	Strong transcription	Spleen	Spleen
50	chr6:37353800-37361200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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