Variant report
| Variant | rs1956907 |
|---|---|
| Chromosome Location | chr14:25023137-25023138 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10083368 | 0.88[CHB][hapmap] |
| rs10083379 | 0.82[CHB][hapmap] |
| rs10083382 | 0.88[CHB][hapmap] |
| rs10083509 | 0.88[CHB][hapmap] |
| rs10129168 | 0.88[CHB][hapmap] |
| rs10133116 | 0.88[CHB][hapmap] |
| rs10133998 | 0.88[CHB][hapmap] |
| rs10140911 | 0.88[CHB][hapmap] |
| rs17103735 | 0.88[CHB][hapmap] |
| rs17103743 | 0.88[CHB][hapmap] |
| rs17103869 | 0.88[CHB][hapmap] |
| rs17103960 | 0.86[CHB][hapmap] |
| rs17104012 | 0.88[CHB][hapmap] |
| rs17200166 | 0.86[AMR][1000 genomes] |
| rs1951137 | 1.00[CHB][hapmap];0.80[JPT][hapmap] |
| rs1956921 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs2073335 | 1.00[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs3742521 | 0.88[CHB][hapmap] |
| rs3759640 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs3814810 | 0.85[CHB][hapmap] |
| rs4555074 | 0.81[ASN][1000 genomes] |
| rs45567233 | 0.86[EUR][1000 genomes] |
| rs7142374 | 0.84[CHB][hapmap] |
| rs7157349 | 0.86[CHB][hapmap] |
| rs737245 | 0.88[CHB][hapmap] |
| rs737246 | 0.88[CHB][hapmap] |
| rs737247 | 0.88[CHB][hapmap] |
| rs8007285 | 0.90[ASN][1000 genomes] |
| rs8007970 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1041336 | chr14:24726564-25527319 | Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
| 2 | nsv542000 | chr14:24726564-25527319 | Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 107 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1956907 | DHRS1 | cis | lymphoblastoid | seeQTL |
| rs1956907 | SDR39U1 | cis | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:25017400-25025600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
