Variant report

Variant	rs2073335
Chromosome Location	chr14:24975161-24975162
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10083368	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs10083379	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs10083382	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs10083509	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs10129168	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs10133116	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap]
rs10133998	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap]
rs10139498	0.88[EUR][1000 genomes]
rs10140911	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap]
rs10220332	0.88[EUR][1000 genomes]
rs1043831	0.81[JPT][hapmap]
rs1043839	0.81[JPT][hapmap]
rs11158703	0.81[JPT][hapmap]
rs11158705	0.81[JPT][hapmap]
rs11628143	0.81[JPT][hapmap]
rs12323581	0.88[EUR][1000 genomes]
rs12882878	0.81[JPT][hapmap]
rs12884447	0.81[JPT][hapmap]
rs17103735	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs17103743	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs17103869	1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap]
rs17103960	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs17104012	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs1951137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1956896	0.81[JPT][hapmap]
rs1956898	0.81[JPT][hapmap]
rs1956904	0.81[JPT][hapmap]
rs1956907	0.81[ASN][1000 genomes]
rs1956921	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2076946	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2273628	0.81[JPT][hapmap]
rs2332333	0.81[JPT][hapmap]
rs2332352	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2877649	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3211056	0.81[JPT][hapmap]
rs3742521	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs3809	0.81[JPT][hapmap]
rs3814810	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap]
rs4406983	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4555074	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981518	0.87[JPT][hapmap]
rs4981519	0.81[JPT][hapmap]
rs4982914	0.81[JPT][hapmap]
rs712487	0.81[JPT][hapmap]
rs7142374	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap]
rs7143327	0.81[JPT][hapmap]
rs7144118	0.81[JPT][hapmap]
rs7149743	0.81[JPT][hapmap]
rs7157349	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap]
rs737245	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs737246	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs737247	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs737248	0.81[JPT][hapmap]
rs8007970	0.81[ASN][1000 genomes]
rs8020496	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs966493	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1053330	chr14:24908047-24993666	Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	n/a
4	esv2761824	chr14:24914008-24993666	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a
5	nsv1043355	chr14:24914008-24993666	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a
6	nsv1045732	chr14:24914008-25019317	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	n/a
7	nsv521915	chr14:24915383-24992619	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
8	nsv564062	chr14:24915383-24992619	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
9	nsv1039955	chr14:24927313-24993666	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
10	nsv1035903	chr14:24929447-24981097	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
11	nsv542001	chr14:24929447-24981097	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
12	nsv1042290	chr14:24930993-24990765	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
13	nsv542002	chr14:24930993-24990765	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
14	nsv983932	chr14:24967593-24993536	ZNF genes & repeats Weak transcription Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2073335	SDR39U1	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24971200-24977800	Weak transcription	Gastric	stomach

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