Variant report

Variant	rs712487
Chromosome Location	chr14:24910210-24910211
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:55)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:55 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24909213-24910242	ProgFib	skin:	n/a	n/a
2	POLR2A	chr14:24909086-24910260	HL-60	blood:	n/a	n/a
3	POLR2A	chr14:24903461-24912546	GM12892	blood:	n/a	n/a
4	POLR2A	chr14:24907942-24910299	Hela-S3	cervix:	n/a	n/a
5	NFATC1	chr14:24908858-24910312	GM12878	blood:	n/a	n/a
6	POLR2A	chr14:24905485-24912569	HUVEC	blood vessel:	n/a	n/a
7	MTA3	chr14:24908923-24910337	GM12878	blood:	n/a	n/a
8	POLR2A	chr14:24905933-24912504	MCF-7	breast:	n/a	n/a
9	POLR2A	chr14:24908371-24910350	HCT-116	colon:	n/a	n/a
10	POLR2A	chr14:24905455-24910478	SK-N-MC	brain:	n/a	n/a
11	POLR2A	chr14:24910066-24910234	A549	lung:	n/a	n/a
12	POLR2A	chr14:24903683-24913003	HepG2	liver:	n/a	n/a
13	POLR2A	chr14:24905442-24912440	HepG2	liver:	n/a	n/a
14	POLR2A	chr14:24908409-24910274	HepG2	liver:	n/a	n/a
15	POLR2A	chr14:24906261-24910355	GM12892	blood:	n/a	n/a
16	POLR2A	chr14:24903880-24912404	K562	blood:	n/a	n/a
17	POLR2A	chr14:24908979-24910304	U87	brain:	n/a	n/a
18	POLR2A	chr14:24909136-24910241	GM12878	blood:	n/a	n/a
19	POLR2A	chr14:24909511-24912466	HCT-116	colon:	n/a	n/a
20	POLR2A	chr14:24905283-24912400	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr14:24906461-24910350	GM12891	blood:	n/a	n/a
22	POLR2A	chr14:24908961-24910637	IMR90	lung:	n/a	n/a
23	POLR2A	chr14:24909026-24910364	GM12891	blood:	n/a	n/a
24	POLR2A	chr14:24909035-24910216	ECC-1	luminal epithelium:	n/a	n/a
25	POLR2A	chr14:24908740-24910295	Hela-S3	cervix:	n/a	n/a
26	POLR2A	chr14:24910041-24910224	A549	lung:	n/a	n/a
27	POLR2A	chr14:24907995-24910254	K562	blood:	n/a	n/a
28	POLR2A	chr14:24905921-24912469	GM12878	blood:	n/a	n/a
29	POLR2A	chr14:24905513-24912697	GM12878	blood:	n/a	n/a
30	POLR2A	chr14:24909086-24910313	K562	blood:	n/a	n/a
31	POLR2A	chr14:24909020-24910298	U87	brain:	n/a	n/a
32	POLR2A	chr14:24906647-24910213	HepG2	liver:	n/a	n/a
33	HEY1	chr14:24906890-24910429	HepG2	liver:	n/a	n/a
34	POLR2A	chr14:24909039-24910552	HUVEC	blood vessel:	n/a	n/a
35	POLR2A	chr14:24906583-24912529	PBDE	blood:	n/a	n/a
36	POLR2A	chr14:24909110-24910360	GM12878	blood:	n/a	n/a
37	POLR2A	chr14:24907235-24910499	PANC-1	pancreas:	n/a	n/a
38	POLR2A	chr14:24905822-24912470	GM12878	blood:	n/a	n/a
39	POLR2A	chr14:24908998-24910404	ECC-1	luminal epithelium:	n/a	n/a
40	POLR2A	chr14:24908943-24910333	K562	blood:	n/a	n/a
41	POLR2A	chr14:24903965-24912834	MCF10A-Er-Src	breast:	n/a	n/a
42	POLR2A	chr14:24910003-24910522	HUVEC	blood vessel:	n/a	n/a
43	POLR2A	chr14:24910149-24910264	HepG2	liver:	n/a	n/a
44	POLR2A	chr14:24909011-24910398	GM12891	blood:	n/a	n/a
45	POLR2A	chr14:24905748-24912859	GM12891	blood:	n/a	n/a
46	POLR2A	chr14:24909103-24910361	H1-hESC	embryonic stem cell:	n/a	n/a
47	POLR2A	chr14:24905633-24910248	PANC-1	pancreas:	n/a	n/a
48	POLR2A	chr14:24909539-24910225	PFSK-1	brain:	n/a	n/a
49	POLR2A	chr14:24905754-24912744	SK-N-SH	brain:	n/a	n/a
50	POLR2A	chr14:24906226-24912586	GM12892	blood:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24816528..24849574-chr14:24893305..24914155,145	MCF-7	breast:
2	chr14:24789439..24822082-chr14:24898039..24913135,99	MCF-7	breast:
3	chr14:24909091..24910881-chr4:187644537..187646251,2	MCF-7	breast:
4	chr14:24791358..24808812-chr14:24895309..24913599,55	K562	blood:
5	chr14:24767332..24771774-chr14:24910139..24913002,7	MCF-7	breast:
6	chr14:24738558..24740532-chr14:24907754..24910468,2	MCF-7	breast:
7	chr14:24796552..24799266-chr14:24908909..24911628,3	K562	blood:
8	chr14:24783396..24785005-chr14:24908424..24911111,2	K562	blood:
9	chr14:24698279..24701346-chr14:24909291..24912292,3	MCF-7	breast:
10	chr14:24827418..24850855-chr14:24894884..24913772,127	MCF-7	breast:
11	chr14:24909605..24912144-chr17:56736218..56737898,2	MCF-7	breast:
12	chr14:24781460..24810019-chr14:24892340..24914262,110	MCF-7	breast:
13	chr14:24800598..24804207-chr14:24909756..24912911,5	K562	blood:

No data

Variant related genes	Relation type
SDR39U1	TF binding region
ENSG00000157379	Chromatin interaction
ENSG00000258973	Chromatin interaction
ENSG00000100949	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000213903	Chromatin interaction
ENSG00000207141	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000083857	Chromatin interaction
ENSG00000129465	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000129559	Chromatin interaction
ENSG00000100968	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10083368	0.83[ASW][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap]
rs10083379	0.83[ASW][hapmap]
rs10083382	0.83[ASW][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap]
rs10083509	0.83[ASW][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap]
rs10129168	0.87[JPT][hapmap]
rs10133116	0.87[JPT][hapmap]
rs10133998	0.87[JPT][hapmap]
rs10140911	0.83[CHD][hapmap];0.87[JPT][hapmap]
rs10143987	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1043831	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1043839	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158703	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158705	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158706	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158707	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158709	0.85[MKK][hapmap]
rs11621453	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621715	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626161	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627132	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11627137	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11628143	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433369	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12433402	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12879887	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12882878	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12884447	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12897925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473725	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17103735	0.87[JPT][hapmap]
rs17103743	0.83[ASW][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap]
rs17103869	0.87[JPT][hapmap]
rs17103960	0.87[JPT][hapmap]
rs17104012	0.83[CHD][hapmap];0.87[JPT][hapmap]
rs17184822	0.92[CEU][hapmap];0.87[TSI][hapmap]
rs1951123	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1951137	0.81[JPT][hapmap]
rs1956892	0.83[YRI][hapmap]
rs1956893	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1956896	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1956898	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1956899	0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1956901	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1956903	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956904	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2073335	0.81[JPT][hapmap]
rs2273628	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2277489	0.92[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2332333	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2332334	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3211056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742521	0.83[ASW][hapmap];0.87[JPT][hapmap]
rs3809	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814810	0.85[JPT][hapmap]
rs4278673	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4290409	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4390517	0.83[MKK][hapmap]
rs4400972	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4433735	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4640100	0.85[MKK][hapmap]
rs4981518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981521	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981522	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981523	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982913	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982914	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982918	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4982919	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982924	0.83[YRI][hapmap]
rs4982925	0.85[MKK][hapmap];0.83[YRI][hapmap]
rs4982926	0.83[YRI][hapmap]
rs7142374	0.85[JPT][hapmap]
rs7143327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7144118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7148891	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7149743	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7151530	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7157349	0.86[JPT][hapmap]
rs737245	0.87[JPT][hapmap]
rs737246	0.83[CHD][hapmap];0.87[JPT][hapmap]
rs737247	0.87[JPT][hapmap]
rs737248	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8008300	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8013991	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs8015535	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs966493	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1053330	chr14:24908047-24993666	Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	n/a
4	nsv482171	chr14:24908974-24912007	Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	40 gene(s)	inside rSNPs	n/a

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs712487	SDR39U1	cis	Muscle Skeletal	GTEx
rs712487	SDR39U1	cis	lymphoblastoid	seeQTL
rs712487	JPH4	cis	parietal	SCAN
rs712487	SDR39U1	cis	Whole Blood	GTEx
rs712487	SDR39U1	cis	Skin Sun Exposed Lower leg	GTEx
rs712487	C14orf124	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24900200-24911000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:24900600-24910600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr14:24901600-24910400	Strong transcription	Placenta Amnion	Placenta Amnion
4	chr14:24902400-24910600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:24904400-24910400	Genic enhancers	Adipose Nuclei	Adipose
6	chr14:24904600-24910400	Strong transcription	Fetal Lung	lung
7	chr14:24904800-24910400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:24905400-24910600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:24905400-24910600	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:24905400-24911000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr14:24905800-24910600	Strong transcription	HSMM	muscle
12	chr14:24906000-24910400	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr14:24906000-24910400	Strong transcription	Osteobl	bone
14	chr14:24906200-24910400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:24906200-24910400	Genic enhancers	Spleen	Spleen
16	chr14:24906200-24910600	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr14:24906400-24910400	Strong transcription	Rectal Smooth Muscle	rectum
18	chr14:24906400-24910600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr14:24906800-24910400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr14:24907000-24910400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr14:24907000-24911000	Weak transcription	Right Atrium	heart
22	chr14:24907200-24910400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr14:24907200-24910600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr14:24907200-24910600	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr14:24907600-24910400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
26	chr14:24907800-24910400	Weak transcription	Fetal Kidney	kidney
27	chr14:24907800-24910600	Weak transcription	HSMMtube	muscle
28	chr14:24908000-24910600	Strong transcription	Fetal Thymus	thymus
29	chr14:24908200-24910600	Genic enhancers	Monocytes-CD14+_RO01746	blood
30	chr14:24908600-24910400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:24908600-24910400	Genic enhancers	Gastric	stomach
32	chr14:24908600-24910600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr14:24908600-24910800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr14:24908600-24910800	Weak transcription	Small Intestine	intestine
35	chr14:24908800-24910400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr14:24908800-24910600	Genic enhancers	NHDF-Ad	bronchial
37	chr14:24908800-24911200	Weak transcription	Ovary	ovary
38	chr14:24909000-24910400	Genic enhancers	Brain Inferior Temporal Lobe	brain
39	chr14:24909000-24910600	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
40	chr14:24909000-24910600	Genic enhancers	Dnd41	blood
41	chr14:24909000-24910800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr14:24909000-24910800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr14:24909000-24910800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
44	chr14:24909000-24910800	Genic enhancers	Colon Smooth Muscle	Colon
45	chr14:24909000-24911000	Genic enhancers	Fetal Muscle Leg	muscle
46	chr14:24909200-24910400	Weak transcription	NH-A	brain
47	chr14:24909200-24910600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr14:24909200-24910600	Genic enhancers	NHLF	lung
49	chr14:24909200-24910800	Genic enhancers	Fetal Muscle Trunk	muscle
50	chr14:24909200-24910800	Genic enhancers	Stomach Smooth Muscle	stomach

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