Variant report

Variant	rs11158703
Chromosome Location	chr14:24910876-24910877
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:56)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:56 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:24910839-24910876	K562	blood:	n/a	n/a
2	POLR2A	chr14:24903461-24912546	GM12892	blood:	n/a	n/a
3	POLR2A	chr14:24910478-24912449	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr14:24905485-24912569	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr14:24910801-24912429	U87	brain:	n/a	n/a
6	POLR2A	chr14:24910719-24910965	GM12891	blood:	n/a	n/a
7	POLR2A	chr14:24905933-24912504	MCF-7	breast:	n/a	n/a
8	POLR2A	chr14:24910732-24911003	K562	blood:	n/a	n/a
9	POLR2A	chr14:24910668-24910981	SK-N-SH	brain:	n/a	n/a
10	POLR2A	chr14:24903683-24913003	HepG2	liver:	n/a	n/a
11	POLR2A	chr14:24905442-24912440	HepG2	liver:	n/a	n/a
12	POLR2A	chr14:24903880-24912404	K562	blood:	n/a	n/a
13	POLR2A	chr14:24910760-24912648	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr14:24909511-24912466	HCT-116	colon:	n/a	n/a
15	POLR2A	chr14:24905283-24912400	Hela-S3	cervix:	n/a	n/a
16	HEY1	chr14:24910553-24912767	HepG2	liver:	n/a	n/a
17	NFATC1	chr14:24910555-24911608	GM12878	blood:	n/a	n/a
18	POLR2A	chr14:24910826-24910906	HUVEC	blood vessel:	n/a	n/a
19	POLR2A	chr14:24910462-24912424	HUVEC	blood vessel:	n/a	n/a
20	POLR2A	chr14:24910786-24912868	HUVEC	blood vessel:	n/a	n/a
21	POLR2A	chr14:24910454-24912726	HepG2	liver:	n/a	n/a
22	MAZ	chr14:24910712-24912758	IMR90	lung:	n/a	n/a
23	POLR2A	chr14:24910513-24912438	Hela-S3	cervix:	n/a	n/a
24	POLR2A	chr14:24905921-24912469	GM12878	blood:	n/a	n/a
25	POLR2A	chr14:24905513-24912697	GM12878	blood:	n/a	n/a
26	TEAD4	chr14:24910495-24913064	HepG2	liver:	n/a	n/a
27	ZNF263	chr14:24910847-24912146	HEK293-T-REx	kidney:	n/a	n/a
28	POLR2A	chr14:24910524-24910981	HCT-116	colon:	n/a	n/a
29	NFATC1	chr14:24910438-24912390	GM12878	blood:	n/a	n/a
30	POLR2A	chr14:24910527-24910944	PANC-1	pancreas:	n/a	n/a
31	POLR2A	chr14:24910645-24910956	ECC-1	luminal epithelium:	n/a	n/a
32	POLR2A	chr14:24910740-24912397	ECC-1	luminal epithelium:	n/a	n/a
33	MBD4	chr14:24910589-24912798	HepG2	liver:	n/a	n/a
34	MBD4	chr14:24910362-24912871	HepG2	liver:	n/a	n/a
35	POLR2A	chr14:24906583-24912529	PBDE	blood:	n/a	n/a
36	POLR2A	chr14:24905822-24912470	GM12878	blood:	n/a	n/a
37	POLR2A	chr14:24910554-24912387	ProgFib	skin:	n/a	n/a
38	MTA3	chr14:24910433-24912810	GM12878	blood:	n/a	n/a
39	POLR2A	chr14:24910698-24912460	GM12891	blood:	n/a	n/a
40	POLR2A	chr14:24903965-24912834	MCF10A-Er-Src	breast:	n/a	n/a
41	POLR2A	chr14:24910843-24912657	PFSK-1	brain:	n/a	n/a
42	POLR2A	chr14:24905748-24912859	GM12891	blood:	n/a	n/a
43	POLR2A	chr14:24910573-24911086	GM12892	blood:	n/a	n/a
44	POLR2A	chr14:24910522-24912431	PANC-1	pancreas:	n/a	n/a
45	POLR2A	chr14:24905754-24912744	SK-N-SH	brain:	n/a	n/a
46	POLR2A	chr14:24910595-24911039	PFSK-1	brain:	n/a	n/a
47	CREB1	chr14:24910600-24912797	HepG2	liver:	n/a	n/a
48	POLR2A	chr14:24910860-24912536	U87	brain:	n/a	n/a
49	POLR2A	chr14:24906226-24912586	GM12892	blood:	n/a	n/a
50	MYBL2	chr14:24910814-24912973	HepG2	liver:	n/a	n/a

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24836714..24839783-chr14:24910555..24913487,3	K562	blood:
2	chr14:24816528..24849574-chr14:24893305..24914155,145	MCF-7	breast:
3	chr14:24789439..24822082-chr14:24898039..24913135,99	MCF-7	breast:
4	chr14:24562331..24564529-chr14:24910345..24912043,2	K562	blood:
5	chr14:24909091..24910881-chr4:187644537..187646251,2	MCF-7	breast:
6	chr14:24791358..24808812-chr14:24895309..24913599,55	K562	blood:
7	chr14:24767332..24771774-chr14:24910139..24913002,7	MCF-7	breast:
8	chr14:24796552..24799266-chr14:24908909..24911628,3	K562	blood:
9	chr14:24783396..24785005-chr14:24908424..24911111,2	K562	blood:
10	chr14:24910782..24911552-chr4:71858996..71859672,2	Hela-S3	cervix:
11	chr14:24698279..24701346-chr14:24909291..24912292,3	MCF-7	breast:
12	chr14:24827418..24850855-chr14:24894884..24913772,127	MCF-7	breast:
13	chr14:24909605..24912144-chr17:56736218..56737898,2	MCF-7	breast:
14	chr14:24709335..24712189-chr14:24910783..24914037,3	K562	blood:
15	chr14:24781460..24810019-chr14:24892340..24914262,110	MCF-7	breast:
16	chr14:24767708..24770495-chr14:24910481..24913051,4	MCF-7	breast:
17	chr14:24800598..24804207-chr14:24909756..24912911,5	K562	blood:

No data

Variant related genes	Relation type
SDR39U1	TF binding region
ENSG00000083857	Chromatin interaction
ENSG00000202077	Chromatin interaction
ENSG00000213903	Chromatin interaction
ENSG00000129559	Chromatin interaction
ENSG00000157379	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000092330	Chromatin interaction
ENSG00000207141	Chromatin interaction
ENSG00000129465	Chromatin interaction
ENSG00000196943	Chromatin interaction
ENSG00000156136	Chromatin interaction
ENSG00000129535	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000100889	Chromatin interaction
ENSG00000258973	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10083368	0.83[ASW][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap]
rs10083379	0.83[ASW][hapmap]
rs10083382	0.83[ASW][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap]
rs10083509	0.83[ASW][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap]
rs10129168	0.87[JPT][hapmap]
rs10133116	0.87[JPT][hapmap]
rs10133998	0.87[JPT][hapmap]
rs10140911	0.83[CHD][hapmap];0.87[JPT][hapmap]
rs10143987	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1043831	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1043839	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158705	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158706	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158707	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158709	0.85[MKK][hapmap]
rs11621453	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621715	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626161	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627132	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11627137	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11628143	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433369	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12433402	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12879887	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12882878	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12884447	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12897925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1473725	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17103735	0.87[JPT][hapmap]
rs17103743	0.83[ASW][hapmap];0.87[JPT][hapmap];0.84[MEX][hapmap]
rs17103869	0.87[JPT][hapmap]
rs17103960	0.87[JPT][hapmap]
rs17104012	0.83[CHD][hapmap];0.87[JPT][hapmap]
rs17184822	0.92[CEU][hapmap];0.87[TSI][hapmap]
rs1951123	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1951137	0.81[JPT][hapmap]
rs1956892	0.86[YRI][hapmap]
rs1956893	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1956896	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1956898	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1956899	0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1956901	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1956903	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956904	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2073335	0.81[JPT][hapmap]
rs2273628	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2277489	0.92[CEU][hapmap];0.91[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2332333	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2332334	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3211056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742521	0.83[ASW][hapmap];0.87[JPT][hapmap]
rs3809	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814810	0.85[JPT][hapmap]
rs4278673	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4290409	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4390517	0.83[MKK][hapmap]
rs4400972	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4433735	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4640100	0.85[MKK][hapmap]
rs4981518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981521	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981522	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981523	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982913	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982914	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982918	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4982919	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982924	0.86[YRI][hapmap]
rs4982925	0.85[MKK][hapmap];0.86[YRI][hapmap]
rs4982926	0.86[YRI][hapmap]
rs712487	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142374	0.85[JPT][hapmap]
rs7143327	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7144118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7148891	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7149743	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7151530	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7157349	0.86[JPT][hapmap]
rs737245	0.87[JPT][hapmap]
rs737246	0.83[CHD][hapmap];0.87[JPT][hapmap]
rs737247	0.87[JPT][hapmap]
rs737248	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8008300	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8013991	0.90[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs8015535	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs966493	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1053330	chr14:24908047-24993666	Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	n/a
4	nsv482171	chr14:24908974-24912007	Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	40 gene(s)	inside rSNPs	n/a

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11158703	SDR39U1	cis	Whole Blood	GTEx
rs11158703	JPH4	cis	parietal	SCAN
rs11158703	SDR39U1	cis	Skin Sun Exposed Lower leg	GTEx
rs11158703	C14orf124	Cis_1M	lymphoblastoid	RTeQTL
rs11158703	SDR39U1	cis	Muscle Skeletal	GTEx
rs11158703	SDR39U1	cis	lymphoblastoid	seeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24900200-24911000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr14:24905400-24911000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr14:24907000-24911000	Weak transcription	Right Atrium	heart
4	chr14:24908800-24911200	Weak transcription	Ovary	ovary
5	chr14:24909000-24911000	Genic enhancers	Fetal Muscle Leg	muscle
6	chr14:24909200-24911000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr14:24909200-24911000	Genic enhancers	Left Ventricle	heart
8	chr14:24909200-24911000	Genic enhancers	Skeletal Muscle Male	skeletal muscle
9	chr14:24909400-24911000	Genic enhancers	Primary T cells fromperipheralblood	blood
10	chr14:24909400-24911000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr14:24909400-24911000	Genic enhancers	Placenta	Placenta
12	chr14:24909800-24911000	Enhancers	Fetal Heart	heart
13	chr14:24909800-24911000	Genic enhancers	Fetal Intestine Large	intestine
14	chr14:24909800-24911200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:24909800-24911200	Enhancers	Stomach Mucosa	stomach
16	chr14:24910000-24911000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr14:24910000-24911000	Enhancers	Primary B cells from cord blood	blood
18	chr14:24910000-24911000	Genic enhancers	Primary B cells from peripheral blood	blood
19	chr14:24910000-24911000	Genic enhancers	Fetal Intestine Small	intestine
20	chr14:24910000-24911000	Genic enhancers	Fetal Stomach	stomach
21	chr14:24910200-24911000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr14:24910200-24911000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr14:24910200-24911000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr14:24910200-24911000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:24910200-24911000	Weak transcription	Aorta	Aorta
26	chr14:24910200-24911000	Enhancers	Colonic Mucosa	Colon
27	chr14:24910400-24911000	Enhancers	Adipose Nuclei	Adipose
28	chr14:24910400-24911000	Enhancers	Liver	Liver
29	chr14:24910400-24911000	Enhancers	Brain Anterior Caudate	brain
30	chr14:24910400-24911000	Enhancers	Brain Cingulate Gyrus	brain
31	chr14:24910400-24911000	Genic enhancers	Fetal Kidney	kidney
32	chr14:24910400-24911000	Genic enhancers	Rectal Mucosa Donor 29	rectum
33	chr14:24910400-24911200	Weak transcription	Gastric	stomach
34	chr14:24910400-24911200	Weak transcription	Lung	lung
35	chr14:24910400-24911200	Flanking Active TSS	HMEC	breast
36	chr14:24910400-24911400	Enhancers	Spleen	Spleen
37	chr14:24910600-24911000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:24910600-24911000	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr14:24910600-24911000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
40	chr14:24910600-24911000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr14:24910600-24911000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr14:24910600-24911000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr14:24910600-24911000	Enhancers	Brain Substantia Nigra	brain
44	chr14:24910600-24911000	Flanking Active TSS	Fetal Brain Female	brain
45	chr14:24910600-24911000	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr14:24910600-24911000	Genic enhancers	Fetal Thymus	thymus
47	chr14:24910600-24911000	Genic enhancers	Rectal Mucosa Donor 31	rectum
48	chr14:24910600-24911000	Enhancers	Rectal Smooth Muscle	rectum
49	chr14:24910600-24911000	Flanking Active TSS	A549	lung
50	chr14:24910600-24911000	Transcr. at gene 5' and 3'	Dnd41	blood

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